Well, after spending a few hours setting up a Project with about 6 DN-e1 synth tracks, my settings all reset back to Patch #001 Bank A (after I load the saved project). Even though the names of my chosen DN-e1 presets show in the Tracks, the VSTs go back to Patch #001 Bank A for all my tracks (especially anything on Bank B).
I really tried to like AP, but I can't use this product. Even if it is still in Beta, AP8 is so unreliable with even saving it's own Synth Presets (in a project), that I have to Pass. Too bad. I really liked many things about AP8 as a quick idea generator. Even the 'limits' of AP8 make is a good foundation to focus on beats and melodies. But losing hours of work -- can't do that anymore. Back to Cubase for me. Sorry about having to say all this. I'll check back in one year.